Re-review / re-analysis¶
Re-review¶
If you would like to re-review a case but no re-processing through the pipeline is required, you can simply re-open the case within the New IB, and re-review (i.e. amend / update your existing case analysis). You can do this as many times as you would like. Please note, you may need to self-serve and restore the case in order to do this. Please see the case archiving page for further details.
Re-analysis (Reprocessing through the pipeline)¶
When a case needs to be re-processed through the pipeline, e.g. with different panels, re-analysis can be requested via the Service Desk, as per the existing process. Once requested:
- A new referral ID will be created
- The case will be redispatched to the New IB
Only the latest version of the case will exist in the IP, however both versions of the case will be visible in the New IB.
N.B. Please make sure you make a note of the original URL of the case before the redispatch takes place, as the direct URL will be the only way to access this once the redispatch has completed.
N.B. Please ensure that the case being analysed is the latest version of the case, so that the corresponding case in the IP is marked as reported and data sent to CVA. VILs for all past reviews will be visible in CVA, so no data is lost.
Future versions of the product will improve how cases that have been re-dispatched are handled and displayed, so that all previous versions of the case can be easily accessed through a case list within the product.
Abbreviations
| Abbreviation | Definition |
|---|---|
| ACGS | Association for Clinical Genomic Science |
| ACMG | American College of Medical Genetics and Genomics |
| CDS | Coding DNA Sequence |
| CIP-API | Genomics England Clinical Interpretation API |
| CNV | Copy Number Variant |
| CVA | Clinical Variant Ark |
| EQ | Exit Questionnaire |
| New IB | New Interpretation Browser |
| GEL | Genomics England |
| GMS | Genomic Medicine Service |
| GLH | Genomic Laboratory Hub |
| HGVS | Human Genome Variation Society |
| HTML | Hyper Text Markup Language |
| HSCN | Health and Social Care Network (N3) |
| IGV | Integrative Genomics Viewer |
| IB | Interpretation Browser |
| IP | Interpretation Portal |
| NGIS | National Genomics Informatics System |
| PID | Patient Identifiable Data |
| QC | Quality Control |
| SoF | Summary of Findings |
| SO | Sequence Ontology |
| SNV | Single Nucleotide Variant |
| SV | Structural Variant |
| TOMS | Test Order Management Service |
| UAT | User Acceptance Testing |
| VCF | Variant Call Format File |
| VILs | Variant Interpretation Logs |
| WGS | Whole Genome Sequencing |