History¶
Making selections or adding comments in the classification pane will also save a record in the History panel on both the variant list and variant details pages to provide a record of the selections made. This will include the name of the person who made the selection, the date, the time, the information type recorded (e.g. Transcript, or Classification), and the input provided. This input could be a drop-down selection, comment added, or selection of the Exclude variant box. If a comment is entered but the cancel button is clicked, the comment will not be saved in the history.
Editing comments¶
History items cannot be edited, with the exception of comment history items. These can be edited or removed by any user, by opening the menu next to the comment and clicking Edit or Delete. This allows for easy removal in the case of any accidentally included patient identifiable information (PID). When a comment is edited, it becomes the most recent comment of that comment type, and the username and timestamp associated with the comment will update to that of the current user and the current time.
Updating selections¶
Existing selections can be updated using the respective drop-down menu. This will record the updated selection at the top of the history card, and retain any prior selections in the variant history for audit trail purposes.
Abbreviations
| Abbreviation | Definition |
|---|---|
| ACGS | Association for Clinical Genomic Science |
| ACMG | American College of Medical Genetics and Genomics |
| CDS | Coding DNA Sequence |
| CNV | Copy Number Variant |
| CVA | Clinical Variant Ark |
| New IB | New Interpretation Browser |
| GEL | Genomics England |
| GMS | Genomic Medicine Service |
| GLH | Genomic Laboratory Hub |
| HGVS | Human Genome Variation Society |
| HTML | Hyper Text Markup Language |
| HSCN | Health and Social Care Network (N3) |
| IGV | Integrative Genomics Viewer |
| IP | Interpretation Portal |
| NGIS | National Genomics Informatics System |
| PID | Patient Identifiable Data |
| QC | Quality Control |
| SO | Sequence Ontology |
| SNV | Single Nucleotide Variant |
| SV | Structural Variant |
| TOMS | Test Order Management Service |
| UAT | User Acceptance Testing |
| VCF | Variant Call Format File |
| WGS | Whole Genome Sequencing |